PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_003204-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 410aa    MW: 46325.5 Da    PI: 8.7573
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_003204-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH246.9e-08176230455
                    HHHHHHHHHHHHHHHHHHHHHCTSCC.C.....TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPk.as..kapskKlsKaeiLekAveYIksLq 55 
                    +h+ +Er RR++i +++  L+ l+P  +   k +s    Ka +L + ++Y++sLq
  NNU_003204-RA 176 SHSLAERARREKISERMKMLQGLVPGcDKviKLSSLITGKALMLDEIINYVQSLQ 230
                    8*************************5547888888888***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-13170241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.44E-8170230No hitNo description
PROSITE profilePS5088814.615172229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-13172240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-5176230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-6178235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
METFSYQDPF FLLDSVILPN TPIKTPGSFE FRDINTTYFP RFPLQPLHEV SVDAGSSAVE  60
RRNAFRIDTE NSVCGKQKTY SSSKVVRVES GDQVIQTETQ KMDKKRRKNR DGFSSNSAQS  120
KDVEEGKRKR QRKCNSASKK TEEKTKCDKN DEKKVAEEPP TSYVHVRARR GQATDSHSLA  180
ERARREKISE RMKMLQGLVP GCDKVIKLSS LITGKALMLD EIINYVQSLQ YEVEFLSMKL  240
ASACPVFYDF GADLDISLPK PEFSASHMKL QNPSSQTLPL SSEQAQVCCS TQPTTFVAAT  300
TTLDTTNNYL ILDSSVDCLL QPGQKLNAHV FSQFVKKFHS GSRLAKEESY ESHMESKPFS  360
FHSKKSELIG PVLCAMNRKK LDDCRSPCRC PIDDPTRREA QKIPTPDSQW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102108DKKRRKN
2103107KKRRK
3126131KRKRQR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010249180.10.0PREDICTED: transcription factor bHLH137-like
TrEMBLM5WMI55e-91M5WMI5_PRUPE; Uncharacterized protein
STRINGVIT_17s0000g00430.t012e-85(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.23e-54bHLH family protein